Laboratory for Intelligent
Global Health & Humanitarian
Response Technologies
Web-based objective and structured assessment of point-of-care lung ultrasound skills in resource-limited settings
Veronique Suttels, Ines Chichignoud, Prudence Ablo Wachinou, Jacques Daniel Du Toit, Pierre-André Mans, Juan Manuel Blanco, Gildas Agodokpessi, Thomas Brahier, Mary-Anne Hartley, Elena Garcia & Noémie Boillat-Blanco
2024
TabSeq: A Framework for Deep Learning on Tabular Data via Sequential Ordering
Al Zadid Sultan Bin Habib, Kesheng Wang, Mary-Anne Hartley, Gianfranco Doretto and Donald A. Adjeroh
2024
MEDITRON: Open Medical Foundation Models Adapted for Clinical Practice
Zeming Chen, Alejandro Hernández Cano, Angelika Romanou, Antoine Bonnet, Kyle Matoba, Francesco Salvi, Matteo Pagliardini, Simin Fan, Andreas Köpf, Amirkeivan Mohtashami, Alexandre Sallinen, Alireza Sakhaeirad, Vinitra Swamy, Igor Krawczuk, Deniz Bayazit, Axel Marmet, Syrielle Montariol, Mary-Anne Hartley, Martin Jaggi and Antoine Bosselut
2024
A gold nanoparticle/peptide vaccine designed to induce SARS-CoV-2-specific CD8 T cells: a double-blind, randomized, phase 1 study in Switzerland
Juliette Besson, Régine Audran, Maxime Karlen, Alix Miauton, Hélène Maby-El Hajjami, Loane Warpelin-Decrausaz, Loredana Sene, Sylvain Schaufelberger, Vincent Faivre, Mohamed Faouzi, et al
2024
MultiModN- Multimodal, Multi-Task, Interpretable Modular Networks
Vinitra Swamy, Malika Satayeva, Jibril Frej, Thierry Bossy, Thijs Vogels, Martin Jaggi, Tanja Kaser and Mary-Anne Hartley
2024
Safety and immunogenicity of a synthetic nanoparticle-based, T cell priming peptide vaccine against dengue in healthy adults in Switzerland: a double-blind,
randomized, vehicle-controlled, phase 1 study
Alix Miauton, Régine Audran, Juliette Besson, Hélène Maby-El Hajjami, Maxime Karlen, Loane Warpelin-Decrausaz,c Loredana Sene, Sylvain Schaufelberger, Vincent Faivre, Mohamed Faouzi, Mary-Anne Hartley, François Spertini, and Blaise Genton
2024
MyThisYourThat for interpretable identification of systematic bias in federated learning for biomedical images
Klavdiia Naumova, Arnout Devos, Sai Praneeth Karimireddy, Martin Jaggi and Mary-Anne Hartley
2024
Automated Interpretation of Lung Sounds by Deep Learning in Children With Asthma: Scoping Review and Strengths, Weaknesses, Opportunities, and Threats Analysis
Isabelle Ruchonnet-Métrailler, Johan N Siebert, Mary-Anne Hartley, Laurence Lacroix
2024
Efficient Classification of Histopathology Images Using Highly Imbalanced Data
Mohammad Iqbal Nouyed, Mary-Anne Hartley, Gianfranco Doretto and Donald A Adjeroh
2024
HashEvict: A Pre-Attention KV Cache Eviction Strategy using Locality-Sensitive Hashing
Minghui Liu, Tahseen Rabbani, Tony O'Halloran, Ananth Sankaralingam, Mary-Anne Hartley, Brian Gravelle, Furong Huang, Cornelia Fermuller, Yiannis Aloimonos
2024
Llama-3 [8B]-MeditronV1. 0—A State-of-the-Art Large Language Model for Medicine in 24 Hours
2024
PLUS-IS-LESS project: Procalcitonin and Lung UltraSonography-based antibiotherapy in patients with Lower rESpiratory tract infection in Swiss Emergency Departments: study protocol for a pragmatic stepped-wedge cluster-randomized trial
Cécile Bessat, Roland Bingisser, Markus Schwendinger, Tim Bulaty, Yvan Fournier, Vincent Della Santa, Magali Pfeil, Dominique Schwab, Jörg D. Leuppi, Nicolas Geigy, Stephan Steuer, Friedemann Roos, Michael Christ, Adriana Sirova, Tanguy Espejo, Henk Riedel, Alexandra Atzl, Fabian Napieralski, Joachim Marti, Giulio Cisco, Rose-Anna Foley, Melinée Schindler, Mary-Anne Hartley, Aurélie Fayet
2024
DeepBreath—automated detection of respiratory pathology from lung auscultation in 572 pediatric outpatients across 5 countries
Julien Heitmann, Alban Glangetas, Jonathan Doenz, Juliane Dervaux, Deeksha M. Shama, Daniel Hinjos Garcia, Mohamed Rida Benissa, Aymeric Cantais, Alexandre Perez, Daniel Müller, Tatjana Chavdarova, Isabelle Ruchonnet-Metrailler, Johan N. Siebert, Laurence Lacroix, Martin Jaggi, Alain Gervaixand Mary Anne Hartley
2023
ePOCT+ and the medAL-suite: development of an electronic clinical decision support algorithm and digital platform for pediatric outpatients in low-and middle-income countries
Rainer Tan, Ludovico Cobuccio, Fenella Beynon, Gillian A Levine, Nina Vaezipour, Lameck Bonaventure Luwanda, Chacha Mangu, Alan Vonlanthen, Olga De Santis, Salim Nahya, Manji Karim, Helga Naburi, Lulu Chirande, Lena Matata Id, Method Bulongeleje, Robert Moshiro, Andolo Miheso, Peter Arimi, Ousmane Ndiaye, Moctar Faye, Aliou Thiongane, Shally Awasthi, Kovid Sharma, Gaurav Kumar, Van Maat Josephine, Kulinkina Alexandra, Victor Rwandarwacu, Théophile Dusengumuremyi, Nkuranga Baptist, John, Emmanuel Rusingiza, Lisine Tuyisenge, Mary-Anne Hartley, Vincent Faivre, Julien Thabard, Kristina Keiteland Valérie D’acremont
2023
Modular Clinical Decision Support Networks (MoDN)—Updatable, interpretable, and portable predictions for evolving clinical environments
Cécile Trottet, Thijs Vogels, Kristina Keitel, Alexandra V. Kulinkina, Rainer Tan, Ludovico Cobuccio, Martin Jaggiand Mary-Anne Hartley
2023
Barriers and facilitators to implementation of point-of-care lung ultrasonography in a tertiary centre in Benin: a qualitative study among general physicians and pneumologists
Veronique Suttels, Sofia Guedes Da Costa, Elena Garcia, Thomas Brahier, Mary-Anne Hartley, Gildas Agodokpessi, Prudence Wachinou, Fabienne Fasseur, Noémie Boillat-Blanco
2023
Deep learning diagnostic and severity-stratification for interstitial lung diseases and chronic obstructive pulmonary disease in digital lung auscultations and ultrasonography: clinical protocol for an observational case–control study
Johan N. Siebert, Mary-Anne Hartley, Delphine S. Courvoisier, Marlène Salamin, Laura Robotham, Jonathan Doenz, Constance Barazzone-Argiroffo, Alain Gervaix & Pierre-Olivier Bridevaux
2023
MEDITRON-70B: Scaling medical pretraining for large language models
Zeming Chen, Alejandro Hernández Cano, Angelika Romanou, Antoine Bonnet, Kyle Matoba, Francesco Salvi, Matteo Pagliardini, Simin Fan, Andreas Köpf, Amirkeivan Mohtashami, Alexandre Sallinen, Alireza Sakhaeirad, Vinitra Swamy, Igor Krawczuk, Deniz Bayazit, Axel Marmet, Syrielle Montariol, Mary-Anne Hartley, Martin Jaggiand Antoine Bosselut
2023
MultiModN- Multimodal, Multi-Task, Interpretable Modular Networks
Vinitra Swamy, Malika Satayeva, Jibril Frej, Thierry Bossy, Thijs Vogels, Martin Jaggi, Tanja Kaserand Mary-Anne Hartley
2023
Predicting Ebola diagnosis and outcome using machine learning: A retrospective cohort study on the 2014-16 West African epidemic
2022
Ultrasound for point-of-care sputum-free tuberculosis detection: Building collaborative standardized image-banks
Véronique Suttels, Prudence Wachinou, Jacques Du Toit, Noémie Boillat-Blancoand Mary Anne Hartley
2022
What If…? Pandemic policy-decision-support to guide a cost-benefit-optimised, country-specific response
Giorgio Mannarini, Francesco Posa, Thierry Bossy, Lucas Massemin, Javier Fernandez-Castanon, Tatjana Chavdarova, Pablo Cañas, Prakhar Gupta, Martin Jaggiand Mary-Anne Hartley
2022
Point-of-care ultrasound for tuberculosis management in Sub-Saharan Africa—A balanced SWOT analysis
Véronique Suttels, Jacques Daniel Du Toit, Arnauld Attannon Fiogbé, Ablo Prudence Wachinou, Brice Guendehou, Frédéric Alovokpinhou, Péricles Toukoui, Aboudou Rassisou Hada, Fadyl Sefou, Prudence Vinasse, Ginette Makpemikpa, Diane Capo-chichi, Elena Garcia, Thomas Brahier, Kristina Keitel, Khadidia Ouattara, Yacouba Cissoko, Seydina Alioune Beye, Pierre André Mans, Gildas Agodokpessi, Noémie Boillat-Blancoand Mary Anne Hartley
2022
Point-of-care lung ultrasonography for early identification of mild COVID-19: a prospective cohort of outpatients in a Swiss screening center
Siméon Schaad, Thomas Brahier, Mary-Anne Hartley, Jean-Baptiste Cordonnier, Luca Bosso, Tanguy Espejo, Olivier Pantet, Olivier Hugli, Pierre-Nicolas Carron, Jean-Yves Meuwly, Noémie Boillat-Blanco
2022
Genomic diversity of torque Teno virus in blood samples from febrile Paediatric outpatients in Tanzania: a descriptive cohort study
Florian Laubscher, Mary Anne Hartley, Laurent Kaiserand Samuel Cordey
2022
Waffle: Weighted averaging for personalized federated learning
Martin Beaussart, Felix Grimberg, Mary-Anne Hartleyand Martin Jaggi
2021
IFedAvg: Interpretable data-interoperability for federated learning
David Roschewitz, Mary-Anne Hartley, Luca Corinziaand Martin Jaggi
2021
Optimal model averaging: Towards personalized collaborative learning
Felix Grimberg, Sai P Karimireddy, Martin Jaggiand Mary-Anne Hartley
2021
Lung Ultrasonography for Risk Stratification in Patients with Coronavirus Disease 2019 (COVID-19)
Thomas Brahier, Jean-Yves Meuwly, Olivier Pantet, Marie-Josée Brochu Vez, Hélène Gerhard Donnet, Mary-Anne Hartley, Olivier Hugliand Noémie Boillat- Blanco
2021
Blood virosphere in febrile Tanzanian children
Samuel Cordey, Florian Laubscher, Mary-Anne Hartley, Thomas Junier, Kristina Keitel, Mylène Docquier, Nicolas Guex, Christian Iseli, Gael Vieille, Philippe Le Mercier, Anne Gleizes, Josephine Samaka, Tarsis Mlaganile, Frank Kagoro, John Masimba, Zamzam Said, Hosiana Temba, Gasser H Elbanna, Caroline Tapparel, Marie-Celine Zanella, Ioannis Xenarios, Jacques Fellay, Valérie D'Acremont, Laurent Kaiser
2021
Lung ultrasonography for risk stratification in patients with coronavirus disease 2019 (COVID-19): a prospective observational cohort study
2021
Deep learning diagnostic and risk-stratification pattern detection for COVID-19 in digital lung auscultations: clinical protocol for a case–control and prospective cohort study
A Glangetas, Hartley MA, Cantais A, Courvoisier DS, Rivollet D, Shama DM, Perez A, Spechbach H, Trombert V, Bourquin S, Jaggi M, Barazzone-Argiroffo C, Gervaix Aand Siebert JN
2021
Point-of-care lung ultrasonography for early identification of mild COVID-19: a prospective cohort of outpatients in a Swiss screening center
2021
Weight erosion: An update aggregation scheme for personalized collaborative machine learning
Felix Grimberg, Mary Anne Hartley, Martin Jaggiand Sai Praneeth Karimireddy
2020
Precision global health: a roadmap for augmented action
Danny J. Sheath, Rafael Ruiz de Castañeda, Nefti-Eboni Bempong, Mario Raviglione, Catherine Machalaba, Michael S. Pepper, Effy Vayena, Nicolas Ray, Didier Wernli, Gérard Escher, Francois Grey, Bernice S. Elger, Dirk Helbing, Kaj-Kolja Kleineberg, David Beran, J. Jaime Miranda, Mark D. Huffman, Fred Hersch, Fred Andayi, Samuel M. Thumbi, Valérie D’Acremont, Mary-Anne Hartley, Jakob Zinsstag, James Larus, María Rodríguez Martínez, Philippe J. Guerin, Laura Merson, Vinh-Kim Ngyuen, Frank Rühli, Antoine Geissbuhler, Marcel Salathé, Isabelle Bolon, Catharina Boehme, Seth Berkley, Alain-Jacques Valleron, Olivia Keiser, Laurent Kaiser, Isabella Eckerle, Jürg Utzingerand Antoine Flahault
2020
Lung ultrasonography for risk stratification in patients with coronavirus disease 2019 (COVI-19): a prospective observational cohort study.
2020
Clinical relevance of low-density Plasmodium falciparum parasitemia in untreated febrile children: a cohort study
Mary-Anne Hartley, Natalie Hofmann, Kristina Keitel, Frank Kagoro, Clara Antunes Moniz, Tarsis Mlaganile, Josephine Samaka, John Masimba, Zamzam Said, Hosiana Temba, Iveth Gonzalez, Ingrid Felger, Blaise Gentonand Valérie D’Acremont
2020
Machine-learning prognostic models from the 2014–16 Ebola outbreak: data-harmonization challenges, validation strategies, and mHealth applications
Andres Colubri, Mary Anne Hartley, Matthew Siakor, Vanessa Wolfman, August Felix, Tom Sesay, Jeffrey G. Shaffer, Robert F. Garry, Donald S. Grant, Adam C. Levineand Pardis C. Sabeti
2019
Nearly complete genome sequence of a novel phlebovirus-like virus detected in a human plasma sample by high-throughput sequencing
Florian Laubscher, Samuel Cordey, Mary-Anne Hartley, Gael Vieille, Noémie Boillat-Blanco, Josephine Samaka, Tarsis Mlaganile, Valerie D’Acremontand Laurent Kaiser
2019
Novel Rhabdovirus and an almost complete drain fly transcriptome recovered from two independent contaminations of clinical samples
Francisco Brito, Mosè Manni, Florian Laubscher, Manuel Schibler, Mary-Anne Hartley, Kristina Keitel, Tarsis Mlaganile, Valerie d’Acremont, Samuel Cordey, Laurent Kaiser, Evgeny M Zdobnov
2019
Detection of dicistroviruses RNA in blood of febrile Tanzanian children
Samuel Cordey, Florian Laubscher, M.-A. Mary Anne Hartley, Thomas Junier, F.J. Francisco J. Pérez-Rodriguez, Kristina Keitel, Gael Vieille, Josephine Samaka, Tarsis Mlaganile, Frank Kagoro, Noémie Boillat-Blanco, Zainab Mbarack, Mylène Docquier, Francisco Brito, Daniel Eibach, Jürgen May, Peter Sothmann, Cassandra Aldrich, John Lusingu, Caroline Tapparel, Valérie D’Acremontand Laurent Kaiser
2019
THE COMPOSITION AND CLINICAL RELEVANCE OF THE BLOOD VIROME IN FEBRILE PEDIATRIC OUTPATIENTS IN TANZANIA BY UNBIASED NEXT GENERATION SEQUENCING
2019
Machine Learning and mHealth Techniques to Improve Prognostication and Clinical Management of Patients with Ebola Virus Disease
Andres Colubri, Mary-Anne Hartley, Mathew Siakor, Vanessa Wolfman, Tom Sesay, August Felix, Adam C. Levine, Pardis C. Sabeti
2018
Leishmania guyanensis parasites block the activation of the inflammasome by inhibiting maturation of IL-1β
M.-A. Hartley, R.O. Eren, M. Rossi, F. Prevel, P. Castiglioni, N. Isorce, C. Desponds, L.-F. Lye, S.M. Beverley, S.K. Drexlerand N. Fasel
2018
Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children
Samuel Cordey, M.-A. Mary Anne Hartley, Kristina Keitel, Florian Laubscher, Francisco Brito, Thomas Junier, Frank Kagoro, Josephine Samaka, John Masimba, Zamzam Said, Hosiana Temba, Tarsis Mlaganile, Mylène Docquier, Jacques Fellay, Laurent Kaiserand Valérie D’Acremont
2018
Investigation of the plasma virome from cases of unexplained febrile illness in Tanzania from 2013 to 2014: a comparative analysis between unbiased and VirCapSeq-VERT high-throughput sequencing approaches
Simon H. Williams, Samuel Cordey, Nishit Bhuva, Florian Laubscher, Mary-Anne Hartley, Noémie Boillat-Blanco, Zainab Mbarack, Josephine Samaka, Tarsis Mlaganile, Komal Jain, Valerie D’Acremont, Laurent Kaiserand W. Ian Lipkin
2018
Prognostic models for Ebola virus disease derived from data collected at five treatment units in Sierra Leone and Liberia: performance, external validation, and risk visualization
Andres Colubri, Adam C. Levine, Mathew Siakor, Vanessa Wolfman, Mary-Anne Hartley, Tom Sesay, August Felix, Pardis C. Sabeti
2018
Exacerbated leishmaniasis caused by a viral endosymbiont can be prevented by immunization with its viral capsid
P. Castiglioni, M.-A. Hartley, M. Rossi, F. Prevel, C. Desponds, D.T. Utzschneider, R.-O. Eren, H. Zangger, L. Brunner, N. Collin, D. Zehn, F.M. Kuhlmann,
S.M. Beverley, N. Faseland C. Ronet
2017
Predicting Ebola severity: a clinical prioritization score for Ebola virus disease
Mary Anne Hartley, Alyssa Young, Anh Minh Tran, Harry Henry Okoni-Williams, Mohamed Suma, Brooke Mancuso, Ahmed Al-Dikhariand Mohamed Faouzi
2017